PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68730.1.p
Common NameBRADI_1g68730, LOC100827246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 431aa    MW: 45534.3 Da    PI: 9.0331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.2e-0778100123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++Cg+ F r  nL+ H r+H
  Bradi1g68730.1.p  78 YVCEICGQGFQREQNLQMHRRRH 100
                       9*********************9 PP

2zf-C2H210.80.0016185207123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C k +  +s++k H++t+
  Bradi1g68730.1.p 185 WVCARCAKGYAVQSDYKAHLKTC 207
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-777100No hitNo description
SMARTSM003556.5E-478100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355110149179IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.57E-7180205No hitNo description
SMARTSM00355270185212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALAVKSHHQ MLASSSTSSS SPSSQPLPPP PPAATSSSCL PADQPSPAKR KRRPPGTPDP  60
DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA ATTAGTTDQD  120
GGGGGTASAG GTGGGAAAAA STVPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG  180
GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRMRA  240
EAVPSTVALP VIRPAVLSRP PPPPSELQLL PAAATKPPLA ATPVFSATTH AATATTTTKL  300
ELSIGRDDHD HEEGEEEEAM RRAMEEKAAA DGERERAREE AAAAERALEE ARRARHHARG  360
ELEAACALRD HAARLLAQVT CHACRQQRSF ADAAGVHVVV SMGVAGGEGH GGSAAAREAL  420
MVRARGGLGL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3761501e-140AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561843.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotQ9C9X71e-109IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLI1H7N30.0I1H7N3_BRADI; Uncharacterized protein
STRINGBRADI1G68730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-85C2H2-like zinc finger protein